De reconciliatione peccatoris : ad regium Collegium Cantabrigiense, libri quatuor. In quibus doctrina ecclesiae Anglicanae de justificatione impij explicatur & defenditur .. (Basileæ, 1624)

A Defence of M. Perkins booke called A Reformed Catholike: against the cavils of a Popish writer, one D. B. P., or W. B. [i.e. William Bishop, Bishop of Chalcedon] on his Deformed Reformation (F. Kyngston, for C. Burley, 1606)

A defence of M. Perkins booke, called A reformed Catholike against the cauils of a popish writer, one D.B.P. or W.B. in his deformed Reformation. By Antony Wotton. (At London : ImFelix Kyngston, for Cuthbert Burby, and are to be sold at his shop in Paules Church-yard at the signe of the Swan, 1606)

Mr. Anthony Wotton's defence against Mr. George Walker's charge, accusing him of Socinian heresie and blasphemie written by him in his life-time, and given in at an hearing by Mr. Walker procured ; and now published out of his own papers by Samuel Wotton his sonne ; together with a preface and postcript, briefly relating the occasion and issue thereof, by Thomas Gataker ... (Cambridge (England) : Roger Daniel ..., 1641)

Runne from Rome. Or, a Treatise shewing the necessitie of separating from the Church of Rome. Disputed in the Termes: Everie man is bound upon paine of damnation to refuse the faith of the Church of Rome, etc (W. J., 1624)

A trial of the Romish clergies title to the Church by way of answer to a popish pamphlet written by one A.D. and entituled A treatise of faith, wherein is briefly and plainly shewed a direct way, by which euery man may resolue and settle his mind in all doubts, questions and controuersies, concerning matters of faith. By Antonie Wotton. In the end you haue three tables: one of the texts of Scripture expounded or alledged in this booke: another of the testimonies of ancient and later writers, with a chronologie of the times in which they liued: a third of the chiefe matters contained in the treatise and answer. (London : [by Richard Field] for Elizabeth Burby widow, and are to be sold at the signe of the Swan in Pauls Churchyard, 1608)